I don't know directly bewteen those two tranmissions but I want to pass on a nugget of experience:
When I built my car, one of the carry-overs from my old set-up were my 3.89 gears. I went from a Muncie 4-speed (2.56:1 1st) with 28" tires, to a TKO (3.27:1 1st) with 26" tires.
Like you, I was focusing on final drive ratio in top gear. With .68 overdrive, 26" tall tires (285/40/17) and 3.89's, they looked fine for the highway.
One of the first things to go, after ONE drive of the car, was the 3.89's. Not because of the final drive, but because of the gearing 1-4. Highway crusing was fine, though.
I guess my point is: Don't just consider the final drive. 1st gear was pretty much non-existant and I was shifting quite often. I swapped 3.25's in and enjoy the car MUCH more.
When calculating, I determined that the drive ratio in first with the new set up was the equivalent of keeping my 4-speed and 28" tires and dropping in some 6.14's or something crazy.
While cruise rpm IS important, it is no more important than the rest of the gears.
Good Luck. I hope this gives you something to consider.