I did exactly what you are talking about in the past for the exact same reasons. I had stock style front brake discs that and a set of lincoln style discs in the back because I had a ford 9". I bought a new manual brake master cylinder from MP brakes and some good brake fluid. The track I used to bring the car to is considered to have a short shut down area and I could stop long before the end and it ran 10.60's at 127. I actually didn't find it any harder to stop since I never had much vacuum anyway.
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